PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC3261_p2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ARF
Protein Properties Length: 865aa    MW: 95621.9 Da    PI: 6.2995
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC3261_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.11.9e-24156257199
                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                 f+k+lt sd++++g +++p++ ae+         +++++  +l+++d++ ++W++++iyr++++r++lt+GW+ Fv +++L++gD+v+F   ++++ +l
  RrC3261_p2 156 FCKTLTASDTSTHGGFSVPRRAAEKLfppldytAQPPTQ--ELVVRDLHENTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLRAGDSVLFI--RDEKSQL 250
                 99*********************999****996444444..8************************************************..4577778 PP

                 EEEEE-S CS
          B3  93 vvkvfrk 99 
                 +v+v+r+
  RrC3261_p2 251 MVGVRRA 257
                 *****97 PP

2Auxin_resp107.71.3e-35282365183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aaha++++++F ++YnPra+++eFv++++k++ka+  +++sv mRf m+feteds +rr++Gt+vg+sdldp+rWp+SkWr+L+
  RrC3261_p2 282 AAHATANRTPFLIFYNPRACPAEFVIPIAKYRKAICgSQLSVSMRFGMMFETEDSGKRRYMGTIVGISDLDPLRWPGSKWRNLQ 365
                 79********************************9989********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.22E-45146285IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.0E-41149270IPR015300DNA-binding pseudobarrel domain
CDDcd100176.23E-23155256No hitNo description
PROSITE profilePS5086313.155156258IPR003340B3 DNA binding domain
PfamPF023624.4E-22156257IPR003340B3 DNA binding domain
SMARTSM010191.1E-25156258IPR003340B3 DNA binding domain
PfamPF065077.8E-31282365IPR010525Auxin response factor
PfamPF023091.5E-9747842IPR033389AUX/IAA domain
PROSITE profilePS5174522.218756840IPR000270PB1 domain
SuperFamilySSF542774.71E-7770835No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009908Biological Processflower development
GO:0009942Biological Processlongitudinal axis specification
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0048507Biological Processmeristem development
GO:0005634Cellular Componentnucleus
GO:0016020Cellular Componentmembrane
GO:0042802Molecular Functionidentical protein binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 865 aa     Download sequence    Send to blast
MMAASLACVE DKMKTNGLII GGTTQTSQST LPEEMKLLKD QSGTRKPVIN SELWHACAGS  60
LVSLPQVGSL VYYFPQGHSE QVAVSTRRSA TTQVPNYPNL PSQLMCQVHN VTLHADKDSD  120
EIYAQMSLQP VHSERDVFPV PDFGLLRGSK HPSEFFCKTL TASDTSTHGG FSVPRRAAEK  180
LFPPLDYTAQ PPTQELVVRD LHENTWTFRH IYRGQPKRHL LTTGWSLFVG SKRLRAGDSV  240
LFIRDEKSQL MVGVRRANRQ QTALPSSVLS ADSMHIGVLA AAAHATANRT PFLIFYNPRA  300
CPAEFVIPIA KYRKAICGSQ LSVSMRFGMM FETEDSGKRR YMGTIVGISD LDPLRWPGSK  360
WRNLQVEWDE PGCNDKPTRV SPWDTETPES LFIFPSLTSG LKRQLHPSYF AGETEWGSLI  420
KRPLIRVSDP TNGILPYASF PNMASEQLMR MMMRPHNNQN ATTSFMSEMQ HNVLVGHAGL  480
LGDMKMQQPM VNPSASNTSG QEQNLSQSMN APAKSENPTL SGCSSGRLSH GNEQQTMEQA  540
SQVRMVSVCN EEKVNELIQR PVALSPVQAD PCPDISQQIY PPANGFSFLE TEELTSQVSS  600
FQSLAGSYKQ PLMLSPQDSS AVVLPDSTNS TLFHDVWDNQ LNGLKFDQFS PLMQQDLYGN  660
STNSSNILDP PLSNTVLDDF CAIKETDFQT HPSDCLVGTN NNSFTQDVQS QITSASFADN  720
SGGTGTSSSN VDFDDSSLLQ NSKGSRQKLA KTPRVRTYTK VQKTGSVGRS IDVTSFRDYK  780
ELKSAIECMF GLEGVLTRPQ SSGWKLVYVD YESDVLLVGD DPWEEFVGCV KCIRILSPTE  840
VQQMSEEGMK LLNSACINDL KTSVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A0.023901392Auxin response factor 5
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00153DAPTransfer from AT1G19850Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN9794650.0JN979465.1 Brassica rapa subsp. pekinensis auxin response factor 5-1 (ARF5-1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013707335.10.0PREDICTED: auxin response factor 5-like
RefseqXP_013707336.10.0PREDICTED: auxin response factor 5-like
RefseqXP_013707337.10.0PREDICTED: auxin response factor 5-like
SwissprotP930240.0ARFE_ARATH; Auxin response factor 5
TrEMBLA0A078JAY40.0A0A078JAY4_BRANA; Auxin response factor
STRINGBra012190.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58082746
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19850.10.0ARF family protein